News

SABIO-RK in MetaNetX

09-26-2017

MetaNetX integrated SABIO-RK and implemented cross-references to compounds and reactions in SABIO-RK.
MetaNetX is an online platform for accessing, analyzing and manipulating genome-scale metabolic networks as well as biochemical pathways.


SABIO-RK at ICSB2017

05-29-2017

COMBINE - de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology


Dates: Sunday, August 6th, 2017
(9:00 - 18:00)

Location: BLacksburg, Virginia (USA)

Website: http://co.mbine.org/events/tutorial2017

This tutorial workshop is a satellite of the 18th International Conference on Systems Biology (ICSB). Participants will learn how to set up computer models of biological systems (e.g. metabolic or signalling networks) using experimental kinetic data and how to simulate them in different systems biology platforms. Hands-on sessions, lectures and software demonstrations will be included, providing attendees with the necessary skills to access experime ntal kinetics data from available resources, to assemble computer models with these data, and finally to simulate the generated models using simulation tools. Also handling and exchange of biological models based on existing community standards will be dem onstrated along with the basic principles of the underlying standard formats.


SABIO-RK Training Event

04-06-2017

SABIO-RK Introduction and Hands-on Training
Wednesday, May 31st, 2017 in Heidelberg
https://www.h-its.org/event/sabio-rk-training-2017/

Target audience:
People interested in systems biology or biochemistry

Learning goals:
- Introduction to the biochemical reaction kinetics database SABIO-RK
- Learning and working with the tools of the database

Hands-on training:
- SABIO-RK web interface
- Export functionalities
- SABIO-RK web services

Prerequisites:
- Basic knowledge and interest in biochemistry or enzymology
- It is recommended to bring your own laptop


The participation is free of charge but registration is required until May 24th.
Please send an email to: maja.rey@h-its.org
Certificate of attendance can be issued.


SABIO-RK in BKMS-react

02-21-2017

As of January 2017 SABIO-RK reactions are added in the biochemical reaction database BKMS-react.

BKMS-react is an integrated and nonredundant biochemical reaction database containing known enzyme-catalyzed and spontaneous reactions. Biochemical reactions collected from BRENDA, KEGG, MetaCyc and SABIO-RK were matched and integrated by aligning substrates and products.